Tuesday, December 26, 2017

#35. The Pilgrim and the Whale [evolutionary psychology]

Red, theory; black, fact.

12-26-17: Just as the whale must hold its breath to obtain its food from the sea, so must a human restrain his or her anger to obtain a paycheck from society. Don't laugh, for the analogy is exact.

The ecological niche occupied by the whale places two of its drives in contradiction: the drive to eat and the drive to breathe. In humans, the contradictory drives are eating and dispersal.

Dispersal is a biological process tending to expand the geographical range of a species. Left to itself, the range shrinks inexorably because of natural disasters such as fire, frost, famine, drought, and pestilence wiping out all members of a given species in a given habitat. When each habitat occupied by the species has had its disaster, the species will be extinct if it has not been dispersing all along. Dispersal re-populates the devastated habitats as they become able to support life again, thereby staving off extinction.

Unfortunately, human dispersal begins with fraught political contests. As soon as one side gets the upper hand, the other must flee. Result: mass migration, i.e., dispersal. Most human anger is really dispersal hunger. However, when people get mad, they break stuff. Stuff like buildings, airports, factories, railway lines, etc. This is the infrastructure on which we all depend for our survival. Because our ecological niche is in a fragile built environment, we are required to compromise between eating and dispersal. And there you have my analysis of the biological roots of our unhappiness.

This contradiction in drives is the ultimate reason why every able-bodied Muslim must make the pilgrimage to Mecca at least once in their lifetime: it mellows them out by giving something to the dispersal drive. The same effect would explain the fact that first-generation immigrants are generally more law-abiding than the natives.

Other institutions that may exist to relieve dispersal hunger are: tourism, the fitness movement, Seeing the World, conference-going, joining the Navy, going away to university, visiting faraway relatives for the holidays, companies moving their employees around a lot, and others I'll think of tomorrow morning.

Happy trails.

2-14-2018: Catholicism is also famous for its tradition of pilgrimage, to such places as Jerusalem, Rome, Lourdes, and Santiago de Compostela, the latter still popular today. Protestantism has no such tradition, however.

3-12-2018: Judaism, Hinduism, and Buddhism all have strong traditions of pilgrimage, and the practice is so universal that it has been proposed as a Jungian archetype by Clift and Clift. I myself walk a lot, because I cannot afford a car or a downtown apartment close to all the amenities. But is that the ultimate reason? 

Sunday, December 17, 2017

#34. Emotions [evolutionary psychology, genetics, neuroscience]

EP    NE    GE
Red, theory; black, fact.

12-17-2017: In previous posts, I theorized that humans, along with all other sexually-reproducing species, have a long-range guidance system that I called proxy natural selection, or preferably, post-zygotic gamete selection (PGS), that is basically a fast form of evolution in which individual cells, the gametes, are the units of selection, not individuals. Selection is conjectured to happen post-zygotically (i.e., sometime after the beginning of development, or even in adulthood) but is retroactive to the egg and sperm that came together to create the individual. Each gamete is potentially unique because of the crossing-over genetic rearrangements that happen during its maturation. This theory explains the biological purpose of this further layer of uniqueness beyond that due to the sexual mixing of chromosomes, which would otherwise appear to be redundant.

Our emotions are conjectured to be programmed by species-replacement group selection and to serve as proxies for increases and decreases in the fitness of our entire species.

A further correlate of an emotion beyond the cognitive and autonomic-nervous-system components would be the neurohumoral component, expressed as chemical releasing and inhibiting factors that enter the general circulation via the portal vessels of the hypothalamus, blood vessels which are conventionally described as affecting only the anterior pituitary gland. These factors are theorized to reach the stem-like cells that mature into egg and sperm, where they set reversible epigenetic controls on the level of crossing-over that will occur during differentiation. Large amounts of crossing-over are viewed as retroactively penalizing the gametes leading to the individual by obfuscating or overwriting with noise specifically the genetic uniqueness of said original gametes. In contrast, low levels of further crossing-over reward the original gametes with high penetrance into the next generation. Here, I believe you have all the essential ingredients of classical natural selection, and all the potential, in a process that solves problems on an historical timescale.

Crossing-over happens only between homologous chromosomes, which are the paternal and maternal copies of the same chromosome. Human cells have 46 chromosomes because they have 23 pairs of homologous chromosomes. The homologous-chromosome-specificity of crossing-over suggests that the grand optimization problem that is human evolution has been broken down into 23 smaller sub-problems for the needs of the PGS process, each of which can be solved independently, without interactions with any of the other 22, and which involves a 23-fold reduction in the number of variables that must be simultaneously optimized. In computing, this problem-fragmentation strategy greatly increases the speed of optimization. I conjecture that it is one of the features that makes PGS faster than classical natural selection.

However, we now need 23 independent neurohumoral factors descending in the bloodstream from brain to testis or (fetal) ovary, each capable of setting the crossing-over propensity of one specific pair of homologous chromosomes. Each one will require its own specific receptor on the surface of the target oogonia or spermatogonia. Check this out in the literature, and you will already find a strange diversity of cell-surface receptors on the spermatogonia. (I haven't looked at oogonia yet.&&) I predict that the number of such receptors known to science will increase to at least 23. None of this is Lamarkism, because nervous-system control would be over the standard deviation of behavioral traits, not their averages.

1-09-2018: Naively, this theory also appears to require 23 second messengers to transfer the signals from cell surface to nucleus, which sounds excessive. Perhaps the second messengers form a combinatorial code, which would reduce the number required by humans to log2 (23) = 4.52, or 5 in round numbers. This is much better. Exactly five second-messenger systems are known, these being based on: cyclic AMP, inositol triphosphate, cyclic GMP, arachidonic acid, and small GTPases (e.g., ras). However, many mammalian species have many more than the 32 chromosome pairs needed to saturate a 5-bit address space.

1-10-2018: If we expand the above list of second messengers with the addition of the calcium/calmodulin complex, the address space expands to 64 pairs of homologous chromosomes, for a total ploidy of 128. This seems sufficient to accommodate all the mammals. Thus, a combinatorial second-messenger code representable as a five- or six-bit binary integer in most organisms would control the deposition of the epigenetic marks controlling crossing-over propensity.

If the above code works for transcription as well as epigenetic modification, then applying whatever stimuli it takes to produce a definite combinatorial second-messenger state inside the cell will activate one specific chromosome for transcription, so that the progeny of the affected cell will develop into whatever that chromosome specifies, be it an organ, a system, or something else. And there you may have the long-sought key to programming stem cells. You're welcome.

Each pair of homologous chromosomes may correspond to what in an earlier post was called a "PNS focus." The requirement that the evolution of each chromosome contribute independently to the total increase in fitness suggests that a chromosome specifies a system, like the nervous system or the digestive system. We seem to have only 11 systems, not 23, but more may be defined in the future.

A related concept is that a chromosome specifies an ancestral, generic cell type, like glial cells (4 subtypes known) or muscle cells (3 subtypes known). The great diversity of the neurons suggest that they must be reclassified into multiple basic types, perhaps along the lines suggested by the functional classification of the cranial nerves: general somatic, general visceral, and special somatic (i.e., specific senses).

1-09-2018: A third concept for function assignment to homologous pairs of chromosomes postulates a hypothetical maximally divided genome in which each cell type has its own chromosome pair, a state conjectured to seldom occur in nature. Co-evolution of clusters of cell types (e.g., neurons and glia; bone and cartilage) would create selection pressure for the underlying cell-type-specific chromosomes to become covalently linked into the larger chromosomes that we see in the actual karyotypes. Thus, each observed homologous pair would correspond to a few cell types that are currently co-evolving, which seems to return us to the system or organ concept. 

01-08-2019: The system specified by a chromosome may be called a cooperation system, and these may be organized in a hierarchy, following the general principles of spatial organization outlined in my post: "The Pictures in Your Head.Chromosomes activated earlier in development will specify system-like entities and those activated late in development will specify organ-like entities. Only the first-activated chromosome will apply to the entire organism.

Humans depend on complex social structures for their survival, and this comes out of our individual behavioral tendencies. Probably, most PGS adaptations to environmental fluctuations involve modifying these structures, which would come out of subtle modifications of individual behaviors. I think I am just repeating E.O. Wilson here. Our hard-wired species-fitness definitions would give rise to the primary emotions, perhaps in the hypothalamus or limbic system, by connecting specific stimuli to primary emotions in the manner of an if-then rule. 

Further out on the cortex, the specific stimuli being connected would get progressively more complex and learning-dependent, and progressively less concerned with the "what" of behavior (i.e., our species-specific taxes) and more with the "how" of behavior. In "how" mode, the complex stimuli become more like signposts to be consulted on a journey. PGS adaptations of our behavior would affect the hardwired aspects of this hypothetical transition zone. The primary emotions would then be like the highest hierarchical level of our motor program, or like the least-indented instructions of a conventional high-level computer program.

I conjecture that religion is important because it goes straight for this highest level. We all know that religion is kind of an emotional business, what with the organ music and the stained glass and all such as that, and this is why. I therefore conjecture that words spoken often from the pulpit, such as God, sin, forgiveness, devil, angel, soul, salvation, etc., all enclose a secret that writers such as Dawkins do not grasp: the emotions are the message. To illustrate this, let us attempt an emotional definition of the master symbol, "God."

God: feeling loved and secure to the point of invulnerability; feeling small in an agreeable way, as in the presence of mountains; feeling brotherly/sisterly towards one's fellow humans; blossoming in confidence into one's full potential; fearing nothing.

Perhaps that's enough to give the general idea. No doubt a whole dictionary could be compiled along these lines. When the priest strings these emotion-words together, he creates an experience for the congregation that could fairly be called a form letter from "God," assuming that the word "God" points to the PGS process itself. The job of the priest is to help the congregation relate on a deep level to the sacred texts and to see/feel how they apply to the challenges of the here and now.

7-05-2018: Another term for PGS would be "Yahwetion," from "Yahweh," the conventional modern spelling of the name of the god of ancient Israel, and the "tion" ending indicating a process, like evolution. This neologism advantageously steers people away from category errors like attempting to worship it, or appease it, or what have you.

The conventionally religious will complain that this would make prayer to God impossible, but not if prayer itself is re conceived as "auto socialization," following the educational theory of prayer. Then prayer becomes a fantasy conversation with anyone, living or dead, that you would like to have as a mentor, if it were possible.

Wednesday, September 13, 2017

#33. Big-electron Theory [physics]

Red, theory; black, fact.

Some of the paradoxes and weirdness of quantum mechanics can be dispelled if we assume that any particle that can be diffracted isn't really there: we are only looking at the center of spherical symmetry of a much larger, possibly cosmologically large, wave function. Furthermore, this center of symmetry is only an abstraction, like the north pole of the Earth. Like the fields that we impute to them, quantum particles would have a wave function amplitude that decreases asymptotically to zero with distance from the center, and thus would have no well defined outer boundary. I shall denote this lack of an outer boundary by calling particles or wave functions "expansive."

Elementary particles seem submicroscopic in size because the wavelength of the corresponding wave functions is often submicroscopic, which imposes a requirement for the centers of symmetry of two such "particles" to coincide with very great precision before an interaction can be observed. This would be the case if the default interaction were characterized by destructive interference almost everywhere, which only switches over into constructive interference when the centers nearly coincide. An assumption needed for further development of this theory is that interaction is contingent on the development of expansive constructive interference. (In this post, I confine my attention to scattering-type interactions.)

The common presence of  accelerations in our universe combined with a finite speed of light might suggest that expansive wave functions would quickly fill up with incoherence, destroying their usefulness as explanatory causes. However, if there are no non-expansive elementary particles, we just have expansive interacting with expansive to produce every acceleration. Once you get entirely away from the tiny-electron idea, it is not at all clear that any incoherence could ever develop. Such may well occur to a limited extent under some conditions, however, but it may take more detailed mathematical treatments than I am prepared to carry out to characterize these conditions. One naturally suspects that Relativity theory is based on such limited incoherencies.

Two baffling kinds of experiment seem amenable to the big-electron treatment: diffraction of "particles" of matter like electrons, and entanglement experiments.

Electrons fired in a vacuum at a pair of closely-spaced slits, with a photographic plate situated on the other side of the slits, will produce a diffraction pattern on the developed plate consisting of alternating exposed and unexposed bands. These are interpreted as locations of constructive and destructive interference between "matter waves" emanating from the two slits under the stimulation of the electron beam. If the intensity of the beam is lowered to the point where only one electron is "in the chamber" at a time, thereby eliminating the possibility of inter-electron interactions inside the chamber, the diffraction pattern develops just as before. It merely takes longer. Now here's the weird part: all this could happen only if each electron goes through both slits at once! This is truly weird if we try to use the traditional tiny-electron picture, but much easier to visualize using the big-electron picture.

Entanglement of two particles that persists over distances measured in kilometers is also easier to understand if we remember that the experimental apparatus is itself made up of expansive wave functions and is therefore mostly overlapped with the two particles being studied throughout the experiment.

If all this is true, we live in a vast web of inter-validating illusions called the particle model.

Sunday, June 18, 2017

#32. Climate Change [engineering]

Red, theory; black, fact.

Reading "Just Cool It!" by Suzuki and Hanington introduced me to the ancient terra preta agricultural technology, given as a possible solution, or part of the solution, to the global warming problem. The term is apparently Portuguese for "black earth" and the technology involves enriching the soil by ploughing it full of charcoal. Suzuki and Hanington make the point that this should sequester a lot of carbon in the soil, thereby taking it out of the atmosphere. Charcoal is nearly pure carbon. Moreover, charcoal, being indigestible to decay organisms, should stay in the soil for a very long time. The logical raw material for making the charcoal would be either wood from clearing the land for agriculture, or crop residues, the parts of the crop plant that people cannot eat.

I would add here that in modern pyrolysis plants, not only is charcoal produced, but also flammable off-gasses, which could be used for fuel directly in some future scenario, or catalytically reformed to a liquid fuel for running the tractors and combines. In gaseous form, the fuel could run a steam turbine to produce electricity to supplement that from wind farms, hydro, tidal, geothermal, thorium-nuclear, and photovoltaics.

However, the off-gasses are also used to fuel the pyrolysis plant itself. Whether any would be left over for other uses would depend on careful plant design for energy efficiency and on avoiding fuelled drying operations. Thus, the feedstock should be sun-dried.

Schemes like second-generation power ethanol are touted as carbon-neutral, but in terra preta with these additions, we have one that is actually carbon-negative.

However, the soil ends up black. No other color is as efficient at converting sunlight into heat, which we don't need more of at this point. This seems to be a problem with the terra preta solution. (The ideal color for avoiding heat production would be white.)

Note that the use of any terrestrial artificial mirror membrane has the drawback that the membrane will get dirty rapidly from dust, pollen, and plant parts, thereby reducing its efficiently. However, a living means of light reflection would renew itself, gratis, each year. Orbiting space mirrors have also been proposed as the solution to global warming. They wouldn't get covered in pollen anytime soon -- just shot full of holes by micrometeorites.

Monday, June 5, 2017

#31. The Russian-dolls--multiverse Part II [physics]

PH
Red, theory; black, fact.

6-05-2017
Forget what I wrote last post about "thin dimensions"; leptons arise as electromagnetic wave functions originating in p2 that are transported into our p3 universe/condensate by ordinary diffusion and convection. Wave functions in p2 that are already leptons become our baryons when they are transported in. The only kind of wave functions that are "native" to a given frame of reference are electromagnetic (photonic) in that frame of reference. If they subsequently propagate towards increasing p (inwards) they gain mass as matter; if they propagate towards decreasing p (outwards), they first lose mass as matter until they are photonic (i.e., massless) and then gain mass as antimatter.

6-20-2017
This scenario gives rise to previously unconsidered solutions to outstanding problems in cosmology. For example, dark matter could be just excess electrons that lack protons with which to bind. You would have to argue that we don't see them because they would collectively appear as a potential that is smooth on all but galactic scales, and it is only variations in potential, aka electric fields, that cause scattering of probe particles. Such variations would be common only in neutral matter.

6-05-2017
To produce stable leptons from in-migrating photons, the first condensates, the p2s, would have had to be rotating simultaneously about three mutually perpendicular axes, by the assumptions of two posts ago. If this is impossible for p3 physics, we have to appeal to the possibility of a different physics in p1 for any of these ideas to make sense.

A "universe" is something like an artist's canvas with a painting in progress on it. First, nature makes the blank canvas, and then, in a second stage, puts the information content on it. Consider the moon. It formed out of orbiting molten spray from the collision of two similarly-sized planetesimals. In the molten state, its self-gravity could easily round it up into a perfect sphere which could have solidified with a mostly smooth surface. Call this smooth surface the "canvas." Subsequently, the very same force of gravity would have brought down meteors to cover the surface in an elaborate pattern of craters. Call this the "painting." 

Now consider the neutronium core of a neutron star, viewed as a p4, or small universe. The tremendous energy release of the catastrophic gravitational collapse in which it forms homogenizes all the matter into pure neutrons, thought to be a superfluid. This creates the "canvas." Subsequently, matter and energy from our p3 migrate into the super fluid without enough energy release to homogenize them, producing a "painting" of leptons (our photons), baryons (our leptons), and "uberbaryons" (our baryons). Indeed, the neutron-star core is actually thought to be not pure neutronium, but neutronium containing a sprinkling of free protons and electrons (as seen in p3, of course).

Saturday, June 3, 2017

#30. The Russian-dolls--multiverse Part I [physics]

Matryoshka/pupa
Red, theory; black, fact.

The nucleus around which a TOE will hopefully crystallize.


6-03-2017
I usually assume in these pages that the space we live in has an absolute frame of reference, as Newton taught, and which Einstein taught against. Not only that, but that this frame of reference is a condensate of some sort, rather like the water that a fish swims in.

I also assume that the divide-and-conquer strategy that has served science so well thus far can blithely continue with the (conceptual) dis assembly of this space into its constituent particles. At that point the question arises if these particles are situated in yet another space, older and larger than ours, or if you go direct to spacelessness, where entities have to be treated like Platonic forms. In the former case, one wonders if that older, larger space in turn comes apart into particles situated in a still older and larger, etc, etc, ad infinitum.

I am told that infinities are the death of theories. Nevertheless, let us hold our noses and continue with the Russian Dolls idea, merely assuming that the nesting sequence is not infinite and will not be infinite until the entire multi verse is infinitely old, because the "dolls" form one by one, by ordinary gravitational collapse, from the outside in.

What, exactly, is it that collapses? Call them wave functions, following quantum mechanics. In the previous post, we see that wave functions are slightly particle-like in having a centre of symmetry. In the outermost space, previously called #, the wave crests always move at exactly the speed of light.

7-14-2017
This speed is not necessarily our speed of light, c, but more likely some vastly greater value.

6-03-2017
The space-forming particles of # are themselves aggregates with enough internal entropy to represent integers and enough secondary valences to form links to a set of nearest neighbors to produce a network that is a space. This space acts like a cellular automaton, with signals passing over the links to change the values of the stored integers in some orderly way. The wave functions are the stereotyped, stable figures that spontaneously develop in the automaton out of the initial noise mass left over from catastrophic gravitational collapse, or some abstract, spaceless equivalent. 

Gravity would enter as a geometric effect; impossible at 1D, poorly developed at 2D, commonplace but commonly stalled at extended systems in 3D, and irresistible at 4D and higher (The latter conclusion is based on an anthropic argument in "The Universe in a Nutshell", by Steven Hawking). 

Finally, assume that the dimensionality of a space increases steadily over time, suggesting that the number of links emanating from each node in the underlying network increases slowly but surely. Macroscopically, this dimensionality increase could look something like protein folding. This does not yet explain gravity, a task for another day&&, but static nonlinearities in the automaton's representation system may be involved.*

To facilitate discussion, let us label the Russian-dolls universes from the outside in, in the sequence 1, 2, 3,...etc, and call this number the "pupacity" of a given frame of reference. (From the Latin "pupa," meaning "doll.") Let us further shorten "pupacity" to "p" for symbol-compounding purposes. Thus, the consecutively labelled spaces can be referred to as p1 (our former "#"), p2, p3,... etc.

A final, absolutely crucial assumption is that pn can exhibit global motions ("n" is some arbitrary pupacity), such as rotation, in the frame of reference of p(n-1). Yes, we are talking here about a whole, damned universe rotating as a rigid unit. Probably, it can drift and vibrate as well.

Now, by the assumptions of the previous post, these global motions must be subtracted from the true, outer, speed-of-light speed of the wave crest to produce its apparent speed and direction when seen from within pn. Thus, the universe's love of spinning and orbiting systems of all sizes is explained: a spinning, global-motion vector is being subtracted from the non-spinning, outermost one. As the0-pupacity of our frame of reference increases, more and more of these global vectors are being subtracted, causing the residual apparent motion to get progressively smaller. We would assume under current physics that the wave functions are acquiring more and more mass, to make them go slower and slower, but mass is just a fiction in the scenario presented above. However, the reliance of current physics on the mass construct is a golden opportunity to determine the pupacity of planet Earth.
It is three.

Three, because physics knows of three broad categories of particle mass: the photon, leptons, and baryons. The photon would be native to p1, leptons, such as electrons and positrons, would be native to p2, and baryons, such as protons and neutrons, would be native to p3, our own, dear home in the heavens. 

01-09-2019: it is an interesting coincidence that our pupacity equals the dimensionality of our space. Are dimensionality and pupacity linked during cosmological evolution?&&

6-03-2017
Some interpretations follow. The positron atom would be a standing-wave pattern made up of oppositely rotating wave functions, an electron and a positron, both native to p2. A neutron would be exactly the same thing, but native to p3. Note that both are unstable in isolation.

How is it that we observers in p3 can even detect electrons, say, if those are not native to p3? Because p2 is necessarily older than p3 and has had more time to develop extra dimensions. This will give p3 thin dimensions when seen in the frame of reference of p2, and it is along these thin dimensions that the electrons of p2 approach our own, native protons closely enough to participate in our p3 physics.

Neutron stars would be p4, but I haven't figured out black holes. Just big p4s?

*6-05-2017
or an amplitude-speed coupling.

Wednesday, May 31, 2017

#29. My Second Theory of Everything [physics]

Red, theory; black, fact.

This post comes from considering how wavelike, low-frequency light becomes particle-like, high-frequency light as frequency is smoothly increased. Waves are continuous, whereas particles are discontinuous; how, then, does the breakup occur?

You have to put the source in the picture. Recoil of the source atom sends the wave function off in a specific direction, but the wave function is known to expand (about its center of symmetry?) as it goes. Presumably, it is the vector sum of these two motions that must equal the speed of light; either one is presumably free to take on some lower speed, say, that of a pitched softball. I conjecture that as frequency increases, the particle-like drift of the center progressively dominates the mixture at the expense of the local, wave-like expansion of the wave function about its center. This is how I see waves morphing into particles as the frequency increases. 

These ideas suggest the existence of a unique, watershed frequency at which both motions are equal, and equal to one-half the speed of light when the vectors are aligned. I suspect that this frequency lies in the terahertz range, between radar frequencies and the far infrared, partly on the basis that this seems to be the last part of the electromagnetic spectrum to find technological use. The non-dominance of either the particle or the wave model in this range may translate into a perfect storm of undesirable properties. That comment about the softball, however, suggests the possible existence of easy, classroom experiments with these frequencies that illustrate wave-particle duality.

These considerations brought me to the following set of TOE assumptions, some from relativity theory, some in apparent contradiction of it, and some from quantum mechanics:
  • There is an absolute frame-of-reference, which I shall call "#."
  • All motions seen in this frame of reference will be observed to occur at the speed of light (c); no more, but no less, and only this frame of reference has this property.
  • All speeds lower than c are illusions caused by the motion of the observer's frame of reference.
  • That which moves always at c is not a wave function, but a phase marker of some sort within it, such as a zero crossing or a wave crest.
  • The local wave function evolution relative to its center of symmetry combined with the drift of that center relative to # always travels at c relative to #.
  • If local evolution is an expansion along all wave function radii, you have light; if it is a rotation about the center of symmetry (i.e., motion perpendicular to radii), you have matter.
  • Light wave functions will be like nested spherical shells, whereas matter wave functions will have a lobar, angle-dependent structure like a p-, d-, or f-orbital in theoretical chemistry. The lobes are essential to provide a contrast pattern that could, in principle, be observed to spin.
  • The presence of one axis of rotation produces the neutrino; two simultaneous axes of rotation produce the mesons; three produce the remaining stable particles, e, p, and n. If the three rotational rates are distinguishable, the resulting structure has a handedness.
  • The matter/antimatter dichotomy arises from this handedness, when combined with a law of conservation of spin that would result from space initially being symmetrical. 
  • The mesons should have an ability in 3-space to flip over into their corresponding antiparticles.