Showing posts with label disaster biology. Show all posts
Showing posts with label disaster biology. Show all posts

Monday, September 13, 2021

#72. Why There is Sex [evolution]

EV

Red, theory; black, fact.

The flower Coronilla varia L.

Sex is an evolvability adaptation

There are always two games in town: reproduction and evolution. Since we live on an unstable planet where the environment can change capriciously, species here have been selected for rapid evolvability per se to enable them to adapt to the occasional rapid environment changes and not go extinct. Apparently, mutations, the starting point for evolutionary adaptation, become more common when the organism is stressed, and stress may partly be a forecast of loss of fertility due to a developing genome-environment mismatch. Bacteria exhibit the large mutation of transformation under stress conditions, and 3 types of stress all increased the meiotic recombination rate of fruit flies (Stress-induced recombination and the mechanism of evolvability. Zhong W, Priest NK. Behavioral ecology and sociobiology. 2011;65:493-502). Recombination can involve unequal crossing-over in which changes in gene dose can occur due to gene duplication or deletion. However, since most mutations are deleterious (there are more ways to do something wrong than to do it better) many mutations will also reduce fertility, and at precisely the wrong moment: when a reduction in fertility is impending due to environment change. The answer was to split the population into two halves: the reproduction specialists and the selection specialists, and remix their respective genomes at each generation.

The roles of the two sexes

Females obviously do the heavy lifting of reproduction, and males seem to be the gene testers. So if a guy gets a bad gene, so long, and the luckier guy next to him then gets two wives. The phenomenon of greater male variability (Greater male than female variability in regional brain structure across the lifespan. Wierenga LM, Doucet GE, Dima D, Agartz I, Aghajani M, Akudjedu TN, Albajes‐Eizagirre A, Alnæs D, Alpert KI, Andreassen OA, Anticevic A. Karolinska Schizophrenia Project (KaSP) Consortium. Hum. Brain Mapp., doi. 2020;10, and I have never seen so many authors on a paper: 160.) suggests that mutations have more penetrance in males, as befits the male role of cannon fodder/selectees. What the male brings to the marriage bed, then, is field-tested genetic information. Male promiscuity can therefore be seen as a necessary part of this system, which allows many mutations to be field tested with minimal loss of whole-population fertility, because it is the females who are the limiting factor in population fertility.

Chromosomal mechanisms of greater male variability

Chromosomal diploidy may be a system for sheltering females from mutations, assuming that the default process is for the phenotype that develops to be the average of the phenotypes individually specified by the paternal and maternal chromosome sets. Averaging tends to mute the extremes. The males, however, may set up a winner-take-all competition between homologous chromosomes early in development, with inactivation of one of them chosen at random. The molecular machinery for this may be similar to that of random x-inactivation in females. The result will be greater penetrance of mutations through to the phenotype and thus greater male variability. 

Quantitative prediction

This reasoning predicts that on a given trait, male variability (as standard deviation) will be 41% greater than the female variability, a testable prediction. 41% = [SQRT(2) -1] × 100. Already in my reading I have found a figure of 30%, which is suggestive. 

Now all I have to do is reconcile all this with the laws of Mendelian inheritance. 

Mechanistic reconciliation with Mendel's laws

09-16-2021: This reconciliation seems to require an exemption mechanism built into the postulated chromosome inactivation process that operates on genes present in only one copy per parent. The effect of this mechanism will be to double the penetrance of dominant alleles at that gene. Therefore, in males, at single-copy genes, evolution of the machinery of sex is driven by the favorable mutations.

A lovers' heart drawn in dust






Sunday, May 23, 2021

#69. Storming South [Evolution]

EV

Red, theory; black, fact.

This is a theory of the final stages of human evolution, when the large brain expansion occurred.
At least, they did. Sorry, I don't belong to this species. The Linnaean binomial literally means "wise man." What would be the Latin for "wise guy"?

Homo sapiens: created by ice

H. sapiens appears to have arisen from Homo erectus over the last 0.8 million years due to climate instability in the apparent origin area, namely East Africa. During this time, Europe was getting glaciated every 0.1 million years because of the astrophysical Milankovitch cycle, a rhythm in the amount of eccentricity in the Earth's orbit due to the influence of the planet Jupiter.
However, I am thinking of the hominins who had settled in Europe (or Asia, it doesn't matter for this argument) during the interglacial periods (remember that H. erectus was a great disperser) and when the ice began advancing again, were now facing much worse cooling and drying than in Africa, and thus much greater selection pressures. At least during the last continental glaciation, the ice cap only extended to the Baltic Sea at the maximum, but long before the ice arrives, the land is tundra, which can support only a very thin human population. In any given glaciation, the number of souls per hectare the land could support was relentlessly declining in northern Europe/Asia, and eventually the residents had to get out of Dodge City and settle on land further south, almost certainly over the dead bodies of the former owners. This would have selected Europeans or Asians for warlike tendencies and warfaring skills, which explains a lot of human history. 

Our large brains

However, our large brains seem to be great at something else besides concocting Games of Thrones: that is, environment modification. It's a no-brainer that the first thing someone living in the path of a 2-km wall of ice needs is to keep from freezing to death, and this would have been the first really good reason to modify environments. Unlike chipping a stone axe, environment modification involves fabricating something bigger than the fabricator. Even a parka has to be bigger than you or you can't get into it. This plausibly would have required a larger brain to enable a qualitatively new ability: making something you can't see all at once when it is at working distance.

Our rhythmic evolution

After parkas, early northerners might have evolved enough association cortex (maybe on the next glaciation cycle) to build something a little bigger, like a tent or a lean-to. On the next cycle, they might have been able to pull off a decent longhouse made of wattle. On the next, a jolly good castle surrounded by cultivated lands and drainage ditches. These structures would have delayed the moment of decision when you have to go and take on the Pleistocene-era Low-brows to the south. This will buy you time to build up your numbers, and I understand that winning battles is very much a numbers game. Therefore, environment modification skill would have been selected for in tandem with making like army ants.

Where is the fossil evidence for this theory?

Why do we not find fossil evidence of all this in Europe or Asia? <05-19-2022: Actually, we do: the Neanderthals and Denisovans, who have been difficult to account for in terms of previous theories of human origins.> My scenario can be defended against the inconvenient fossil evidence for a human origin in East Africa in general terms, by citing the well known incompleteness of the fossil record and its many biases, but, of course, I want details. Note, however, what else is in East Africa: the Suez, a land bridge to both Europe and Asia via the Arabian tectonic block, which was created by plate tectonics near the end of the Miocene, thus antedating both H. sapiens and H. erectus. Not only can hominins disperse through it to other continents during interglacials, but they can come back in, fiercer and brainier than before, when the ice is advancing again, to then deposit their fossil evidence in the Rift Valley region of East Africa. The Eurasian backflow event of 3000 years ago may be a relatively recent example of this. The Isthmus of Suez is low-lying and thus easily drowned by the sea, but the probability of this was minimal at times of continental glaciation, when sea levels are minimal. I assume that early hominins expanded like a gas into whatever continent they could access. Increasing glaciation/tundrafication of that continent would have recompressed the "gas" southward, causing it to retrace its path, partly back into Africa. 

Pleistocene selection pressures

To reiterate, this process would have been accompanied by great mortality and therefore, potentially, much selection. Moreover, during the period we are considering, temperatures were declining most of the time; the plot of temperature versus time has a saw-tooth pattern, with long declines alternating with short warming events, and it is the declines that would have been the times of natural selection of hominins living at high latitudes.

Plebius sapiens.

A limestone block in Canada showing scratches left by stones
embedded in the underside of a continental glacier.
The rock has also been ground nearly flat by the same process. Scary.

Glaciated boulder by night. Have a nice interglacial.


Tuesday, June 16, 2020

#66. Neuromodulators as Peril Specialists [Neuroscience]

NE

Red: theory; black, fact.


Solanum dulcamara, a plant with anticholinesterase activity.



“Life is Difficulty”


My PhD thesis was about a neuromodulator acting on mammalian brain. It was tough to decapitate all those rats; I never got used to it. But if you can’t stand the formaldehyde, get out of the lab.

The basic theory

I conjecture that the primordial function of any type of transmitter substance acting on the g-protein-coupled cell-surface receptors or nuclear receptors of neurons was to coordinate the whole-organism response to some class of perils.
 

Complications

Glutamate, GABA, and acetylcholine are usually considered neurotransmitters, not neuromodulators, but all three have G-protein-coupled receptors in addition to ionotropic receptors and are thus both.
In thermoregulation, hypothalamic glutamate and GABA act on the body via the serotonergic raphe pallidus nucleus. The implied connection with predation (See table) would be due to the fact that animals become torpid at extremes of temperature and thus easy prey. The larger predator would have a smaller surface to volume ratio and thus slower warming and cooling after leaving its refugium to hunt. The predator thermal advantage would have been the selection pressure for thermal sensitivity in the anti-predation system, which eventually became upstream of temperature regulation effectors generally. 
The functional assignments suggested in Table 1 would mostly pertain to a very primordial brain. The implication is that any modern biological function of the neuromodulator substance other than organizing the response to a specific type of peril was elaborated out of the primordial function over long-term evolution, which can act opportunistically to confer new functions on preexisting adaptations.
An example of such elaboration is shown for dopamine in the inferred social role. A pre-adaptation for this role split may have been breast-feeding.

Table 1.

 Peril  Substance  Failure mode
Extremes of heat and cold glutamate and GABA  ?
Predator serotonin depression
Parasite histamine phobia
Rival conspecific noradrenaline paranoia
Social isolation

Wednesday, March 25, 2020

#64. The Drill Sergeants of the Apocalypse [evolutionary psychology, population]

EP     PO     

Red, theory; black, fact.

Seen in a hospital ward.
Updated 10-30-2024

The trickster type may really be a penetration tester. 

The type probably emerges in contexts of unequal power (Elmer Fudd has the shotgun; Bugs Bunny doesn’t). Thus, an abiding fear is the soil out of which tricksterism grows, by the following positive feedback:
A successful trick shows up the Fudds and shows them in a feckless light, which reduces the fear level of the trickster, which reinforces trick-playing. This is a short-term high that comes at the expense of worse relations with the Fudds and thus eventually even greater fear levels for the tricksters, which they try to remedy with still more tricks.
An example of an unequal power relationship is between a foreign invader and the defenders. Invasion is such a common event in history that by now, countermeasures will have evolved. Tricksterism is likely to be a tile in the mosaic of any such adaptation.

A biological precedent for penetrations testing?

Evidence for a biological precedent may be the many retroviruses integrated into the human genome. Presumably, one of these becomes active now and then at random and kills the host cell if the anti-viral defenses of the latter have become weak due to some somatic mutation. The red team-blue team strategy seems to be too good a trick for nature to miss (TGTNM).

Evolution of the trickster

09-27-2020: Modern human populations may have two (independent?) axes of political polarization: oppressor-oppressed and trickster-control freak. The first may sub serve dispersal by generating refugee groups and the second may sub serve building. Any built thing must serve in a complex world in which many constraints must be simultaneously observed. Thus, after the initial build, a long period of tweaking must typically follow. The role of the tricksters is to powerfully motivate this tweaking before the complacency of the control-freak builders leads to disaster. <03-12-2021: This may have been how engineering was done by an archaic version of Homo sapiens.><12-02-2022: The tricksters can also make mistakes, causing damage that cannot have a silver lining in any possible world, and moving to correct this is a natural role of the builders. If you are a builder, ask this: “What is the best use of my indignation?” It is to keep to a strict harm-reduction approach.><01-08-2024: Tricksterism can intensify into sadism, in which the protagonist takes pleasure in the victim’s torment and wants to make it last. Well, boy, if you make it last, you are giving the victim plenty of time and motivation to figure out solutions, like a patient old instructor giving his pupil his lessons one at a time, as he is ready for them, and this is how the wise victim will construct the situation. Such a victim will end up with information and know-how others will pay for.>


A tangent about our evolutionary context

Our evolutionary forebears may have been champion dispersers for a long time <12-21-2020: i.e., Homo erectus*> before the ice age** forced some of them to become champion builders (initially, of shelters and warm clothing). <12-31-2020: "champion environment modifiers" may be closer to the mark than "champion builders"> It is an interesting fact that physically, humans exceed all other animals only in long-distance running, which can be read as dispersal ability. Our carelessness with preserving the local environments and our propensity for overpopulation can be read as typical r-selected disperser behavior. <12-21-2020: The r-selecting niche was probably big game hunting. H. erectus sites indicate consumption of medium and large meat animals. Overhunting would have occurred routinely, due to the slow reproduction rates of large animals and the high hunting efficiency of H. erectus due to tool use, so that dispersal of the hunters to new habitats would likewise have been routine.>

* H. erectus: lived 2 million years ago to 100,000 years ago. H. sapiens: earliest fossils, 300,000 years old. Evidence of behavioral modernity: 100,000–70,000 y ago.

** that is, the Pleistocene ice age, itself a sequence of 5 successive continental glaciations (by oxygen isotope evidence) separated by temperate periods, starting 2.6 million years ago and thought to be not over yet. Over the past 800,000 y, continental glaciation has happened rhythmically on a 100,000-y cycle due to astronomical factors (Milankovitch cycle). Selection for building skill may therefore have occurred in multiple successive episodes over the course of the Pleistocene.